Libby Shoop

Associate Professor of Computer Science

Selected Published Works

[1]
E. Shoop, J. Srivastava, P. Bieganski, J. Riedl, and E. Retzel, “An object-oriented genetics information system,” in Proceedings of the 1993 ACM/SIGAPP symposium on Applied computing: states of the art and practice, New York, NY, USA, 1993, pp. 641–651.
[2]
E. H. Chi, P. Barry, E. Shoop, J. V. Carlis, E. Retzel, and J. Riedl, “Visualization of Biological Sequence Similarity Search Results,” in Proceedings of the 6th conference on Visualization  ’95, Washington, DC, USA, 1995, p. 44–.
[3]
S. M. Engstrom, E. Shoop, and R. C. Johnson, “Immunoblot interpretation criteria for serodiagnosis of early Lyme disease,” J. Clin. Microbiol., vol. 33, no. 2, pp. 419–427, Feb. 1995.
[4]
E. H. Chi, J. Riedl, E. Shoop, J. V. Carlis, E. Retzel, and P. Barry, “Flexible information visualization of multivariate data from biological sequence similarity searches,” in Proceedings of the 7th conference on Visualization  ’96, Los Alamitos, CA, USA, 1996, p. 133–ff.
[5]
I. Allona, M. Quinn, E. Shoop, K. Swope, S. St Cyr, J. Carlis, J. Riedl, E. Retzel, M. M. Campbell, R. Sederoff, and R. W. Whetten, “Analysis of xylem formation in pine by cDNA sequencing,” Proc. Natl. Acad. Sci. U.S.A., vol. 95, no. 16, pp. 9693–9698, Aug. 1998.
[6]
K. A. Silverstein, E. Shoop, J. E. Johnson, A. Kilian, J. L. Freeman, T. M. Kunau, I. A. Awad, M. Mayer, and E. F. Retzel, “The MetaFam Server: a comprehensive protein family resource,” Nucleic Acids Res., vol. 29, no. 1, pp. 49–51, Jan. 2001.
[7]
E. Shoop, K. A. Silverstein, J. E. Johnson, and E. F. Retzel, “MetaFam: a unified classification of protein families. II. Schema and query capabilities,” Bioinformatics, vol. 17, no. 3, pp. 262–271, Mar. 2001.
[8]
K. A. Silverstein, E. Shoop, J. E. Johnson, and E. F. Retzel, “MetaFam: a unified classification of protein families. I. Overview and statistics,” Bioinformatics, vol. 17, no. 3, pp. 249–261, Mar. 2001.
[9]
R. Shoemaker, P. Keim, L. Vodkin, E. Retzel, S. W. Clifton, R. Waterston, D. Smoller, V. Coryell, A. Khanna, J. Erpelding, X. Gai, V. Brendel, C. Raph-Schmidt, E. G. Shoop, C. J. Vielweber, M. Schmatz, D. Pape, Y. Bowers, B. Theising, J. Martin, M. Dante, T. Wylie, and C. Granger, “A compilation of soybean ESTs: generation and analysis,” Genome, vol. 45, no. 2, pp. 329–338, Apr. 2002.
[10]
P. J. Wagner, E. Shoop, and J. V. Carlis, “Using scientific data to teach a database systems course,” in ACM SIGCSE Bulletin, New York, NY, USA, 2003, vol. 35, pp. 224–228.
[11]
J. E. Johnson, M. V. Stromvik, K. A. T. Silverstein, J. A. Crow, E. Shoop, and E. F. Retzel, “TableView: portable genomic data visualization,” Bioinformatics, vol. 19, no. 10, pp. 1292–1293, Jul. 2003.
[12]
L. O. Vodkin, A. Khanna, R. Shealy, S. J. Clough, D. O. Gonzalez, R. Philip, G. Zabala, F. Thibaud-Nissen, M. Sidarous, M. V. Strömvik, E. Shoop, C. Schmidt, E. Retzel, J. Erpelding, R. C. Shoemaker, A. M. Rodriguez-Huete, J. C. Polacco, V. Coryell, P. Keim, G. Gong, L. Liu, J. Pardinas, and P. Schweitzer, “Microarrays for global expression constructed with a low redundancy set of 27,500 sequenced cDNAs representing an array of developmental stages and physiological conditions of the soybean plant,” BMC Genomics, vol. 5, p. 73, Sep. 2004.
[13]
E. Shoop, P. Casaes, G. Onsongo, L. Lesnett, E. O. Petursdottir, E. K. Y. Donkor, D. Tkach, and M. Cosimini, “Data exploration tools for the Gene Ontology database,” Bioinformatics, vol. 20, no. 18, pp. 3442–3454, Dec. 2004.
[14]
R. Brown, E. Shoop, J. Adams, C. Clifton, M. Gardner, M. Haupt, and P. Hinsbeeck, “Strategies for preparing computer science students for the multicore world,” in Proceedings of the 2010 ITiCSE working group reports, New York, NY, USA, 2010, pp. 97–115.
[15]
C. D. Shaffer, C. Alvarez, C. Bailey, D. Barnard, S. Bhalla, C. Chandrasekaran, V. Chandrasekaran, H.-M. Chung, D. R. Dorer, C. Du, T. T. Eckdahl, J. L. Poet, D. Frohlich, A. L. Goodman, Y. Gosser, C. Hauser, L. L. M. Hoopes, D. Johnson, C. J. Jones, M. Kaehler, N. Kokan, O. R. Kopp, G. A. Kuleck, G. McNeil, R. Moss, J. L. Myka, A. Nagengast, R. Morris, P. J. Overvoorde, E. Shoop, S. Parrish, K. Reed, E. G. Regisford, D. Revie, A. G. Rosenwald, K. Saville, S. Schroeder, M. Shaw, G. Skuse, C. Smith, M. Smith, E. P. Spana, M. Spratt, J. Stamm, J. S. Thompson, M. Wawersik, B. A. Wilson, J. Youngblom, W. Leung, J. Buhler, E. R. Mardis, D. Lopatto, and S. C. R. Elgin, “The genomics education partnership: successful integration of research into laboratory classes at a diverse group of undergraduate institutions,” CBE Life Sci Educ, vol. 9, no. 1, pp. 55–69, 2010.
[16]
R. Brown and E. Shoop, “Modules in community: injecting more parallelism into computer science curricula,” in Proceedings of the 42nd ACM technical symposium on Computer science education, New York, NY, USA, 2011, pp. 447–452.
[17]
P. Garrity, T. Yates, R. Brown, and E. Shoop, “WebMapReduce: an accessible and adaptable tool for teaching map-reduce computing,” in Proceedings of the 42nd ACM technical symposium on Computer science education, New York, NY, USA, 2011, pp. 183–188.
[18]
E. Shoop, R. Brown, E. Biggers, M. Kane, D. Lin, and M. Warner, “Virtual clusters for parallel and distributed education,” in Proceedings of the 43rd ACM technical symposium on Computer Science Education, New York, NY, USA, 2012, pp. 517–522.