Libby Shoop

Associate Professor of Computer Science

Selected Published Works

E. Shoop, J. Srivastava, P. Bieganski, J. Riedl, and E. Retzel, “An object-oriented genetics information system,” in Proceedings of the 1993 ACM/SIGAPP symposium on Applied computing: states of the art and practice, New York, NY, USA, 1993, pp. 641–651.
E. H. Chi, P. Barry, E. Shoop, J. V. Carlis, E. Retzel, and J. Riedl, “Visualization of Biological Sequence Similarity Search Results,” in Proceedings of the 6th conference on Visualization  ’95, Washington, DC, USA, 1995, p. 44–.
S. M. Engstrom, E. Shoop, and R. C. Johnson, “Immunoblot interpretation criteria for serodiagnosis of early Lyme disease,” J. Clin. Microbiol., vol. 33, no. 2, pp. 419–427, Feb. 1995.
E. H. Chi, J. Riedl, E. Shoop, J. V. Carlis, E. Retzel, and P. Barry, “Flexible information visualization of multivariate data from biological sequence similarity searches,” in Proceedings of the 7th conference on Visualization  ’96, Los Alamitos, CA, USA, 1996, p. 133–ff.
I. Allona, M. Quinn, E. Shoop, K. Swope, S. St Cyr, J. Carlis, J. Riedl, E. Retzel, M. M. Campbell, R. Sederoff, and R. W. Whetten, “Analysis of xylem formation in pine by cDNA sequencing,” Proc. Natl. Acad. Sci. U.S.A., vol. 95, no. 16, pp. 9693–9698, Aug. 1998.
K. A. Silverstein, E. Shoop, J. E. Johnson, A. Kilian, J. L. Freeman, T. M. Kunau, I. A. Awad, M. Mayer, and E. F. Retzel, “The MetaFam Server: a comprehensive protein family resource,” Nucleic Acids Res., vol. 29, no. 1, pp. 49–51, Jan. 2001.
E. Shoop, K. A. Silverstein, J. E. Johnson, and E. F. Retzel, “MetaFam: a unified classification of protein families. II. Schema and query capabilities,” Bioinformatics, vol. 17, no. 3, pp. 262–271, Mar. 2001.
K. A. Silverstein, E. Shoop, J. E. Johnson, and E. F. Retzel, “MetaFam: a unified classification of protein families. I. Overview and statistics,” Bioinformatics, vol. 17, no. 3, pp. 249–261, Mar. 2001.
R. Shoemaker, P. Keim, L. Vodkin, E. Retzel, S. W. Clifton, R. Waterston, D. Smoller, V. Coryell, A. Khanna, J. Erpelding, X. Gai, V. Brendel, C. Raph-Schmidt, E. G. Shoop, C. J. Vielweber, M. Schmatz, D. Pape, Y. Bowers, B. Theising, J. Martin, M. Dante, T. Wylie, and C. Granger, “A compilation of soybean ESTs: generation and analysis,” Genome, vol. 45, no. 2, pp. 329–338, Apr. 2002.
P. J. Wagner, E. Shoop, and J. V. Carlis, “Using scientific data to teach a database systems course,” in ACM SIGCSE Bulletin, New York, NY, USA, 2003, vol. 35, pp. 224–228.
J. E. Johnson, M. V. Stromvik, K. A. T. Silverstein, J. A. Crow, E. Shoop, and E. F. Retzel, “TableView: portable genomic data visualization,” Bioinformatics, vol. 19, no. 10, pp. 1292–1293, Jul. 2003.
L. O. Vodkin, A. Khanna, R. Shealy, S. J. Clough, D. O. Gonzalez, R. Philip, G. Zabala, F. Thibaud-Nissen, M. Sidarous, M. V. Strömvik, E. Shoop, C. Schmidt, E. Retzel, J. Erpelding, R. C. Shoemaker, A. M. Rodriguez-Huete, J. C. Polacco, V. Coryell, P. Keim, G. Gong, L. Liu, J. Pardinas, and P. Schweitzer, “Microarrays for global expression constructed with a low redundancy set of 27,500 sequenced cDNAs representing an array of developmental stages and physiological conditions of the soybean plant,” BMC Genomics, vol. 5, p. 73, Sep. 2004.
E. Shoop, P. Casaes, G. Onsongo, L. Lesnett, E. O. Petursdottir, E. K. Y. Donkor, D. Tkach, and M. Cosimini, “Data exploration tools for the Gene Ontology database,” Bioinformatics, vol. 20, no. 18, pp. 3442–3454, Dec. 2004.
R. Brown, E. Shoop, J. Adams, C. Clifton, M. Gardner, M. Haupt, and P. Hinsbeeck, “Strategies for preparing computer science students for the multicore world,” in Proceedings of the 2010 ITiCSE working group reports, New York, NY, USA, 2010, pp. 97–115.
C. D. Shaffer, C. Alvarez, C. Bailey, D. Barnard, S. Bhalla, C. Chandrasekaran, V. Chandrasekaran, H.-M. Chung, D. R. Dorer, C. Du, T. T. Eckdahl, J. L. Poet, D. Frohlich, A. L. Goodman, Y. Gosser, C. Hauser, L. L. M. Hoopes, D. Johnson, C. J. Jones, M. Kaehler, N. Kokan, O. R. Kopp, G. A. Kuleck, G. McNeil, R. Moss, J. L. Myka, A. Nagengast, R. Morris, P. J. Overvoorde, E. Shoop, S. Parrish, K. Reed, E. G. Regisford, D. Revie, A. G. Rosenwald, K. Saville, S. Schroeder, M. Shaw, G. Skuse, C. Smith, M. Smith, E. P. Spana, M. Spratt, J. Stamm, J. S. Thompson, M. Wawersik, B. A. Wilson, J. Youngblom, W. Leung, J. Buhler, E. R. Mardis, D. Lopatto, and S. C. R. Elgin, “The genomics education partnership: successful integration of research into laboratory classes at a diverse group of undergraduate institutions,” CBE Life Sci Educ, vol. 9, no. 1, pp. 55–69, 2010.
R. Brown and E. Shoop, “Modules in community: injecting more parallelism into computer science curricula,” in Proceedings of the 42nd ACM technical symposium on Computer science education, New York, NY, USA, 2011, pp. 447–452.
P. Garrity, T. Yates, R. Brown, and E. Shoop, “WebMapReduce: an accessible and adaptable tool for teaching map-reduce computing,” in Proceedings of the 42nd ACM technical symposium on Computer science education, New York, NY, USA, 2011, pp. 183–188.
E. Shoop, R. Brown, E. Biggers, M. Kane, D. Lin, and M. Warner, “Virtual clusters for parallel and distributed education,” in Proceedings of the 43rd ACM technical symposium on Computer Science Education, New York, NY, USA, 2012, pp. 517–522.